ShinySurfer - Software Tool for the Analysis and Visualization of MRI images of the brain






Packages

References

1) Allen M, Poggiali D, Whitaker K, Marshall TR, Kievit RA. Raincloud plots: a multi-platform tool for robust data visualization. Wellcome Open Research 2019;4:63. doi: 10.12688/wellcomeopenres.15191.1
2) Amunts K & Zilles K. Architectonic mapping of the human brain beyond Brodmann. Neuron 2015;88:1086-1107. doi:10.1016/j.neuron.2015.12.001 Destrieux C, Fischl B, Dale A, Halgren E. Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. 3) NeuroImage 2010;53:1–15. doi:10.1016/j.neuroimage.2010.06.010
4) Fischl B. FreeSurfer. NeuroImage 2012;62:774–781. doi: 10.1016/j.neuroimage.2012.01.021
5) Marcus DS, Wang TH, Parker J, Csernansky JG, Morris JC, Buckner RL. Open Access Series of Imaging Studies (OASIS): Cross-sectional MRI data in young, middle aged, nondemented, and demented older adults. Journal of Cognitive Neuroscience 2007;19:1498-1507. doi: 10.1162/jocn.2007.19.9.1498
6) Mowinckel AM & Vidal-Piñeiro D. Visualization of brain statistics with R packages ggseg and ggseg3d. Advances in Methods and Practices in Psychological Science 2020;3:466-483. doi: 10.1177/2515245920928009
7) Tibshirani R. Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society. Series B (Methodological) 1996;58:267-288. URL: https://www.jstor.org/stable/2346178
8) Fischl, Bruce & Dale, Anders. (2000). Fischl B, Dale AM. Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc Natl Acad Sci USA 97: 11050-11055. Proceedings of the National Academy of Sciences of the United States of America. 97. 11050-5. 10.1073/pnas.200033797

Citation

Klawitter S, Cai Y, Ye B, Klawonn F, Sörös P. ShinySurfer: A tool for visualization and statistical analysis of cortical parameters [version 1; not peer reviewed]. F1000Research 2021, 10:440 (poster) (doi: 10.7490/f1000research.1118565.1)